Affinity Classification of Kinase Inhibitors by Mass Spectrometric Methods and Validation Using Standard IC50 Measurements was written by Jecklin, Matthias Conradin;Touboul, David;Jain, Rishi;Naggar Toole, Estee;Tallarico, John;Drueckes, Peter;Ramage, Paul;Zenobi, Renato. And the article was included in Analytical Chemistry (Washington, DC, United States) in 2009.SDS of cas: 219580-11-7 The following contents are mentioned in the article:
Protein kinases have emerged as a major drug target in the last years. Since more than 500 kinases are encoded in the human genome, cross-reactivity of a majority of kinase inhibitors causes problems. Tools are required for a rapid classification of inhibitors according to their affinity for a certain target to refine the search for new, more specific lead compounds Mass spectrometry (MS) is increasingly used in pharmaceutical research and drug discovery to investigate protein-ligand interactions and determination of binding affinities. We present a comparison of different existing nanoelectrospray-MS based methods to quantify binding affinities and qual. rank, by competitive experiments, the affinity of several clin. inhibitors. We also present a new competitive method which is derived from our previous work for quant. assessment of binding strengths. The human kinases studied for this purpose were p38α (MAPK14) and LCK (lymphocyte specific kinase), and their interaction with 17 known small mol. kinase inhibitors was probed. Moreover, we present a new method to differentiate type I from type II inhibitors based on a kinetic experiment with direct MS read-out of the noncovalent complex between the human kinase and the inhibitor. This method was successfully applied to p38α binding to BIRB796, as well as to a BIRB796 analog. Quant. determination of the binding strength is also described. The results of our competitive experiments for the affinity classification of different inhibitors, as well as the results for the kinetic study, are in good agreement with IC50 measurements and data found in the literature. This study involved multiple reactions and reactants, such as 1-(tert-Butyl)-3-(2-((4-(diethylamino)butyl)amino)-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl)urea (cas: 219580-11-7SDS of cas: 219580-11-7).
1-(tert-Butyl)-3-(2-((4-(diethylamino)butyl)amino)-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl)urea (cas: 219580-11-7) belongs to pyrimidine derivatives. The aromatic compound pyrimidine, and its derivatives, are ubiquitous in nature. They are found in nucleic acids, vitamins, amino acids, antibiotics, alkaloids, and a variety of toxins. We all know its importance to life – pyrimidine and purine bases are included in the structure of DNA and RNA.SDS of cas: 219580-11-7
Referemce:
Pyrimidine | C4H4N2 – PubChem,
Pyrimidine – Wikipedia